I am, by no means an authority on this, so I'm just making a guess.
I'd try a few things. First, maybe get some WD40 and spray it around where the stopper meets the bottle. Let it soak in for a while and see if that loosens it up. If that fails, auto mechanics have a product that's meant to loosen nuts and bolts on car engines that are stuck together over time. Should be easy enough to find at an auto supply or even like Walmart.
Now, the caution with both of these is, I don't know id these products will damage the glass in any way. I wouldn't think so, glass is pretty tough stuff, really. Though fragile as far as brealing and chipping, it's pretty darn sturdy as far as other kinds of damage. The harm I'm thinking of is in the nature of clouding or discoloring.